BAMBOO - 2014 - Annual activity report

BAMBOO

BAMBOO - 2014

Project-Team Bamboo

Members

Overall Objectives

Research Program

Application Domains

Domain

New Software and Platforms

New Results

Evolution of the genomes of endosymbionts in insects: the case of Hamiltonella defensa interacting with its various partners
Cardinium cBtQ1 providing insights into genome reduction, symbiont motility, and its settlement in Bemisia tabaci
Mitochondrial respiration and genomic analysis provide insight into the influence of the symbiotic bacterium on host trypanosomatid oxygen consumption
Telling metabolic stories to explore metabolomics data
MiRNA and co: Methodologically exploring the world of small RNAs
Efficient Algorithms for analysing RNA-seq Data
Reference-free detection of isolated SNPs
Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin
Length and symmetry on the sorting by weighted inversions problem
Efficient tree reconciliation enumerator plus cophylogeny reconstruction algorithm via an Approximate Bayesian Computation
Others

Partnerships and Cooperations

Dissemination

Bibliography

Publications of the year

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Section: New Software and Platforms

KisSNP

Participants : Vincent Lacroix [EPI] , Pierre Peterlongo [Contact, pierre.peterlongo@inria.fr] , Nadia Pisanti, Marie-France Sagot [EPI] , Nicolas Schnel.

Algorithm for identifying SNPs without a reference genome by comparing raw reads. KisSNP has now given birth to DiscoSNP in a work involving V. Lacroix from BAMBOO and the GenScale Inria Team at Rennes (contact: pierre.peterlongo@inria.fr).

http://alcovna.genouest.org/kissnp/ , http://colibread.inria.fr/software/discosnp/

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